rs29717399 SNP Detail

Summary

• ID
  rs29717399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14966183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTACTTT CTGAGAACTG
  GTGTGATCCT GTAAGAGTCC TGAGAAGCTC GTCTAGAAAG AGAGCCAGGA CTGATGGGGC
  CACAAAAGGA GAACCTGCTT CCCCCAAATG CTCCTCCAAA CAGCAGTTCC CTTGTCACAT
  GCCCACAGTC AGGGGAGAGG GGGCACTGAC CATAGACTCA AAATCTCCGC AACTGTGAGC
  Y
  GAGAAAGGTT TTCTTCTTTT AAAGTGGCAT GTCAGACATC TTGTTATATA TAAGGCTAAT
  TACCAGACAT CTTCATTGCT TTTTAGTAAG TAGACTGTTT TATAGAACGA GACAAAAGTG
  AGCTGATCGA AGGTTCTGAA ACTAAAAGAT CCATTTTCCA CAAATTAAAA ACTCCACAAT
  TTCCTTGCTG TGCCCTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562435	NES12905648	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29717399					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562435	NES12905648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14966183 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	353 bp downstream
Rr573732	regulatory region 573732	276 bp proximal
Rr573733	regulatory region 573733	1373 bp proximal