rs29716588 SNP Detail

Summary

• ID
  rs29716588
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14967458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATTGTT TTATTTCCAT
  CTCTTCAGCT ACATCTCATC TATGTATACA CCTATATGTA TCCAAACTTA CATGCTCCTG
  CACACTTAAA CCATGCAGGA TCACCTGCAC ACATCTGCAC ATGTATATAG AGAGTGTGTC
  ATCCAAGCAA GCTATGGAAG TTCTTCTGCT TTCAAATTAA GACTATTCAT CATGATGGTA
  K
  CTAGAGAGTT GCAATACACA TTTTTCTTGT TATTAATCAT TTAAAATTCT TTCCCCACAC
  ATCTGTAATT TGCCATATAC TACATATAAT GAAATAAAGA TTACTCAACT TTACAGATGA
  AGCTCGGATG CCATATGAAT CAGTGTTTAT ATTCTGTCCA CAGTACCTCC CACAGACTCA
  GTGCGCCCTG TCCAGTTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562424	NES12905406	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29716588					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562424	NES12905406	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14967458 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	1628 bp downstream
Rr573732	regulatory region 573732	26 bp distal
Rr573733	regulatory region 573733	98 bp proximal