rs29716546 SNP Detail

Summary

• ID
  rs29716546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15022912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCATGAAA GACTTTTTTA
  CAAGGACTTT TACAAGTGGA TTGATGTTTG ACTAACTCTG ACTCTGGCCT GTGCTGCCAA
  TTTTCCTGCC TACTCATTAT GGGGGCTGTG AAGTGCTTCT AATAGAGACT AAAGAGTTAG
  AGTTGCTGAG ATTATTATAA TAAATTGAGA ACATACTAGA AAAACCCTTA TTTGAAGACA
  R
  CTTTCATGGT TAAGAAATAG CTGCCCGTTG TTAGTCCTGG AAGGAGTGAA AGCTCTGAAC
  AACAGTGCAT GGGAAGTCTA GGTTTGACCC CGAGTTCATC CTTTGGCTGT TCACGGAATC
  TTGAACAGGT TATTCATCTG TCCATTTGTC AGTTTCTTCA TCTGGGTGTT GATTTCACAA
  GGTCAAAACA AGCACACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49562152	NES12903517	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss320668306	CHEV_3_14957852	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29716546					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562152	NES12903517	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15022912 () rs orientation: forward

Symbol	Name	Function Class
Rr573737	regulatory region 573737	within coordinates
Rr573738	regulatory region 573738	1719 bp proximal