rs29716545 SNP Detail

Summary

• ID
  rs29716545
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15022942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAGTGGA TTGATGTTTG
  ACTAACTCTG ACTCTGGCCT GTGCTGCCAA TTTTCCTGCC TACTCATTAT GGGGGCTGTG
  AAGTGCTTCT AATAGAGACT AAAGAGTTAG AGTTGCTGAG ATTATTATAA TAAATTGAGA
  ACATACTAGA AAAACCCTTA TTTGAAGACA GCTTTCATGG TTAAGAAATA GCTGCCCGTT
  K
  TTAGTCCTGG AAGGAGTGAA AGCTCTGAAC AACAGTGCAT GGGAAGTCTA GGTTTGACCC
  CGAGTTCATC CTTTGGCTGT TCACGGAATC TTGAACAGGT TATTCATCTG TCCATTTGTC
  AGTTTCTTCA TCTGGGTGTT GATTTCACAA GGTCAAAACA AGCACACTGA CAGGGGACAA
  GTACTGCTCT GTTTTCGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562151	NES12903519	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29716545					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562151	NES12903519	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15022942 () rs orientation: forward

Symbol	Name	Function Class
Rr573737	regulatory region 573737	within coordinates
Rr573738	regulatory region 573738	1689 bp proximal