rs29716530 SNP Detail

Summary

• ID
  rs29716530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164230696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT TGTACCAGTT AACCCTTGTC
  Y
  CAGCTTTAAC AATGGCAAAA CAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45354908	mCV22941063	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148224340	ENSMUSSNP3296462	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320605746	CHEV_2_164214512	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29716530					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164230696 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12651	CpG island 12651			476 bp proximal
Matn4	matrilin 4			617 bp downstream
Rr569592	regulatory region 569592			1443 bp distal
Rr569593	regulatory region 569593			1625 bp distal
Rr569594	regulatory region 569594			189 bp proximal
Rr569595	regulatory region 569595			802 bp proximal
Slpi	secretory leukocyte peptidase inhibitor			Intron
				Noncoding-Transcript-Variant