rs29715825 SNP Detail

Summary

• ID
  rs29715825
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15024131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGGGAG GGGCAAGCTA
  GGTTTGCAGG AAGCTCTTAA GGAGGCCAAT GTATCTCTGA GTGTGACCCC GGTCAGAGTT
  GGTTTCAGGA TGAGCTGTCC TCTGGAACTT GACATTGCCA GCATTCCTTG AAACATTACA
  GCATAGCTAG CTAGCTGCAG TAGGTAACTC TTAACCCAGA ATTTCCAGGT TTAATAGAAT
  S
  TGCCATTCAG CTTCCCAAAT GTTGGCTTTT GAGTGGCATG TCAATTCTGA GGAATTAAAA
  TCTCTATAGC AAAAACAGGA AATTCGTGTT TTTACAAAGG TCACAAATTA TTACTGTGGT
  CAGCCACTTT GAGCTAATGC TTTGAAATTC ACAGGGAGGG TTTTTTTTTT TCTCTCCACC
  CTGATAATCA TAGCTTGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562141	NES12903323	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29715825					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562141	NES12903323	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15024131 () rs orientation: forward

Symbol	Name	Function Class
Rr573737	regulatory region 573737	1109 bp distal
Rr573738	regulatory region 573738	500 bp proximal