rs29710662 SNP Detail

Summary

• ID
  rs29710662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50580567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTTGGA GTACAGACAA
  AAGAAAGAGG GCATGGGGGA ATTTTTTTTT CCAAGTTCGT CAGATTGCTC ATATCCTTAG
  AGCAAAAGGA GATTTGCGAT TGTAGCAAAA AACTAACAAA ACAAAACAGC CAAAACAAAC
  AAACAAACAA ACAAACAAAC AAAAAACCCA GTGCATGCTA AAGTGGTCAG GCACAGGCAA
  R
  TTGGTCTTGC TAACCCCCAG TGTTCATCCC CAAGTAGCAG TCTTACCTTG GTTTCCAGGA
  TTAGCTGCTG CCAGGCTGCT CCTACTTCCA ATGCCATCCA CCACCTGTGG CTAGCCTACA
  GAGAGCTGGC TGCCGCTCAC ACTTCCCATT ACACCCTTAA AAGGATAACA CAAAAGACTT
  GTAATATGCC AGCCAAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47873690	NES11694472	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29710662					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873690	NES11694472	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50580567 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	within coordinates
Rr630049	regulatory region 630049	1614 bp distal
Rr630050	regulatory region 630050	1771 bp distal