rs29710659 SNP Detail

Summary

• ID
  rs29710659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50580425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAGTTG GCCTGCTCCT
  TTGCCACCCC CTACTCCTCC CGATTCCCCC ATCTGGCTTC ACCCCACCAC CCACCCTGTG
  CTCCTGCTAA GACTCCCACT TTGCAACAAA CTTAACAGAT AGGACATTTA CACAGTGTGG
  GGAGGGCTTG GAGTACAGAC AAAAGAAAGA GGGCATGGGG GAATTTTTTT TTCCAAGTTC
  R
  TCAGATTGCT CATATCCTTA GAGCAAAAGG AGATTTGCGA TTGTAGCAAA AAACTAACAA
  AACAAAACAG CCAAAACAAA CAAACAAACA AACAAACAAA CAAAAAACCC AGTGCATGCT
  AAAGTGGTCA GGCACAGGCA AATTGGTCTT GCTAACCCCC AGTGTTCATC CCCAAGTAGC
  AGTCTTACCT TGGTTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873686	NES11694470	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29710659					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873686	NES11694470	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50580425 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	within coordinates
Rr630049	regulatory region 630049	1472 bp distal
Rr630050	regulatory region 630050	1629 bp distal