rs29710658 SNP Detail

Summary

• ID
  rs29710658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50580232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGTAGC TATTCTGAAT
  TTGGGTGGAG AGAAGCATAT TCAAATATGT GGTTCTCTCA GTAAACATTT TTATAACCAA
  AATTAAAAAA CTATGGACAA ATTACAGAAG CTGGATAGAA ACTCCTCTGA CATGTAGAAA
  TATGGATAAG AGGAGACACA GCAGGGGGCA GCAGGTGTGT GTGCTGAGTG CTTACAGCAG
  Y
  TGGCCTGCTC CTTTGCCACC CCCTACTCCT CCCGATTCCC CCATCTGGCT TCACCCCACC
  ACCCACCCTG TGCTCCTGCT AAGACTCCCA CTTTGCAACA AACTTAACAG ATAGGACATT
  TACACAGTGT GGGGAGGGCT TGGAGTACAG ACAAAAGAAA GAGGGCATGG GGGAATTTTT
  TTTTCCAAGT TCGTCAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47873684	NES11694469	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29710658					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873684	NES11694469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50580232 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	within coordinates
Rr630049	regulatory region 630049	1279 bp distal
Rr630050	regulatory region 630050	1436 bp distal