rs29710541 SNP Detail

Summary

• ID
  rs29710541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10459805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTGCTA ATGCCACATG
  TGTTAGTTCA CCTTACATTG CGTTGCTGAG CTCTGCTTGT TGTGACTTCG TGGAACGAAA
  TGCACCAAAA ACCTGGTGTT TCTCTGGCAG CTTCTTGCTC CTTCCAGGGA CTTGGACCGA
  TTGGCAGAAT GATGTCAGCC GATACAGGCT CTTGTGGAGT TTTTCTAGGC AAGACTCACC
  Y
  ACTGAGGCAA CACATGTGCT GAGGCAAAAC CTGTGGAGGA CTTGTGATGT TTGGAGGGAT
  ATAAATAGGA CTCAGTGAAC TGTGAACAGA GGCTTGCTTG CTTGCATAGA TAGCTTGGCA
  ACGCTTCCTT GGTCTCAATT CTTCGCTGAT CTTCACGTGG TTGAGAGAGA CACAGCAAAG
  AACTTCTCCT GGTGTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49558277	NES12888252	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29710541					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49558277	NES12888252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10459805 () rs orientation: forward

Symbol	Name	Function Class
Gm66278	predicted gene, 66278	within coordinates
Rr573635	regulatory region 573635	930 bp proximal
Rr573636	regulatory region 573636	1015 bp proximal