rs29710538 SNP Detail

Summary

• ID
  rs29710538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10460620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG GGCTTTTAAT TTAAAACTAT
  R
  AATACCACCA AATCAGGTGT TATTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45413398	mCV25007034	ABI	CRAMUS_MOUSE	f	SNP	A			G		G
ss49558274	NES12887974	PERLEGEN	MM_PANEL2	f	SNP		A	A		G	G	A		G	G	A	G		G
ss134582260	ENSMUSSNP1266317	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					G
ss320653549	CHEV_3_10395560	CHEVERUD	SCREENING_POP	f	SNP								A					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29710538					SNP	A	A	A	G	G	G	A	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49558274	NES12887974	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10460620 () rs orientation: forward

Symbol	Name	Function Class
Gm66278	predicted gene, 66278	within coordinates
Rr573635	regulatory region 573635	115 bp proximal
Rr573636	regulatory region 573636	200 bp proximal