rs29709142 SNP Detail

Summary

• ID
  rs29709142
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9616504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAGAAC TTGGTTCATC
  ATGTAAGGCA ACACTTCTCC AGTGAGGGAT GCCAGGTTTT ACTTTATTAA AAACAAACAA
  ACAAACAAAC AAAACAATGA GAAGGAAACA CAGATTTTAA ATATAGAGGC CATGGGCAGC
  CCAGTACAAC TGTTACTTCT ATATCTCCAA TTAATCATGC AATAAAAAGA CCTGGCCTGC
  K
  GATACACCAA CATTTAGAGC AGAAAATACA TGAGCTAGTT TAGCTATAAG CGGTCAGTCC
  TGATTTGTGT ATTTTCATTC TCAGAGTAGC TGAAGTACAA CACTCCTAAT TACTGATGAG
  AGACAACCTC TTCTTATGTC TCCTACGTAG AGGTACTAAC CATATATACT AACTTTGTAA
  TTTAAGGAGC AAACACCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49557700	NES12889135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29709142					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557700	NES12889135	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9616504 () rs orientation: forward

Symbol	Name	Function Class
Rr573443	regulatory region 573443	143 bp distal
Rr573444	regulatory region 573444	911 bp proximal
Zfp704	zinc finger protein 704	Intron