rs29709136 SNP Detail

Summary

• ID
  rs29709136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9617516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGGCCAG AGAGCAGCAG
  AGCCAGGCAC TGAGCCTCTC CTGACCATGG GTTCTGTTTC CTATGCTACC TTTTCTCAGG
  GGTAGACACA CTTCACATGC TCTTCCGCTT TGCAATGGCG TCCCTCTGCA ACTGCAAGTA
  GACGTCTCCA CTGTGGGCTG TACTTTGTTT ACACTGTATG CAGAGGAAGG CACAGCCATT
  R
  ACTGGACAGG AGGCAGCTCT GAGGTCCAAC CCACTGGTGC TGAACTGCAA GTGCAGCTCT
  TCCTGATGGA CAGCAGCGCT CGCTCCCTTC AGCTCTGTAT CAGCTTCCTG TTAACTTGAC
  CCAAGCTGGA GTCATCTCGG TGGAGAGAAA GCCTCCATCA GACTGGTCTG CACAGCTCAG
  TGAAGCAACG TCTTGATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49557694	NES12889059	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29709136					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557694	NES12889059	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9617516 () rs orientation: forward

Symbol	Name	Function Class
Gm65791	predicted gene, 65791	1260 bp upstream
Rr573443	regulatory region 573443	1155 bp distal
Rr573444	regulatory region 573444	within coordinates
Zfp704	zinc finger protein 704	Intron