rs29708981 SNP Detail

Summary

• ID
  rs29708981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:67970914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG GGACATGTTT TCTTTTTGCG
  Y
  GGTCTGCCTT TAAGATTTGG CGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47873565	NES11931354	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		T	T	T		C
ss147146120	ENSMUSSNP3031512	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C
ss323351590	CHEV_10_67597832	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29708981					SNP	C	C	C	C	T	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873565	NES11931354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67970914 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arid5b	AT-rich interaction domain 5B			Coding-Synonymous
				mRNA-UTR
				mRNA-UTR
Rr384864	regulatory region 384864			1115 bp upstream
Rr433196	regulatory region 433196			202 bp distal
Rr433197	regulatory region 433197			28 bp proximal
Rr433198	regulatory region 433198			1450 bp proximal
Rr433199	regulatory region 433199			1532 bp proximal
Tssr3230	transcription start site region 3230			1641 bp downstream
Tssr3231	transcription start site region 3231			1657 bp downstream
Tssr3232	transcription start site region 3232			1723 bp downstream
Tssr93877	transcription start site region 93877			1919 bp upstream
Tssr97989	transcription start site region 97989			184 bp downstream
Tssr97990	transcription start site region 97990			205 bp downstream
Tssr97991	transcription start site region 97991			1487 bp downstream
Tssr97992	transcription start site region 97992			1529 bp downstream
Tssr97993	transcription start site region 97993			1543 bp downstream
Tssr97994	transcription start site region 97994			1566 bp downstream
Tssr97995	transcription start site region 97995			1600 bp downstream
Tssr97996	transcription start site region 97996			1618 bp downstream
Tssr97997	transcription start site region 97997			1629 bp downstream
Tssr97998	transcription start site region 97998			1695 bp downstream