rs29708920 SNP Detail

Summary

• ID
  rs29708920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10312556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCGCAC AATGACAGAT
  CCAGAGGAGC ACCGCCTTCT GTCAGTGTTG AAACCCTGAT TGCACAACCC TGCGCTTGCT
  TCACGTGTGA GTGGGAGATC AGGGAACACG CTATTTTAAA AATTCTTTTT AGAGCTTCAA
  CTTCTCAACC CATAGGAGTT TCAAATTCTT ACAAAGATAT GGTTATCTGT GAATGTTTCC
  Y
  TTCAGCTCTT GTAAGAGAGG AGAAGCCAGG CTCAGTTTTT TTCTGGCTTT AGGGCAAGTA
  AGTGGGTGCT TTTCTGATAG ACAGTTCAAG TGACAAGGAC ACACCAGAGC ACTTACCACC
  ACCATTTTCC CATCTACCAG TCTCCTGCAG ATGGTGGCTT CCTTGCCATC CCAGTCCTGG
  ACTTGAACCA AGGAGTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49559036	NES12893785	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29708920					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49559036	NES12893785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10312556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr397603	regulatory region 397603			1949 bp upstream
Rr573595	regulatory region 573595			13 bp distal
Rr573596	regulatory region 573596			1804 bp proximal