rs29708914 SNP Detail

Summary

• ID
  rs29708914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10313333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTGTCT GTACTAATTG
  CTCTTGCTTC TTTAGTTTCT CTTGACAATT TTATCACAGA TATCTAAGAT GCCTTTATTA
  ATTGTTTCAG TCAAAATTCC TTCGATTTAT ATGTACTGGC ATTTCAAGTC CCATGTTTAT
  TAAACCTCTG TCAAAGGGGT ATAATAATTC CTTTTATCAG AATATTACCC TTAGCAGAGG
  Y
  ACAACTGAGG GCATCAACTC AAACAAACAA ACAAACTAAA AGCAAAACCA AAGAATTATT
  GATAGACTAT TATAGCAACC ACTGGGTGCT GGGAAACAAA TAGCAAGTTC CATTGTTGAG
  ATGATCAGTC TACTATGGGT AAACTGGTAA CACAAATAAT AAAATACAGG GAAAGTATAT
  ATTATAAATA AATGCTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49559030	NES12893791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29708914					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49559030	NES12893791	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10313333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr397603	regulatory region 397603			1172 bp upstream
Rr573595	regulatory region 573595			790 bp distal
Rr573596	regulatory region 573596			1027 bp proximal
Rr573597	regulatory region 573597			1286 bp proximal