rs29708831 SNP Detail

Summary

• ID
  rs29708831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50578099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTTTGT CTCATGTCCT
  TCCTTCGAGT CTCCTGATCC CAATTTGTAG TTGTTCCTCC CTTCCCTTGA GAACCCTGTT
  GCTTAAGTCC TGCAGGTCCG GGCACAATGT GTCATTTATA GAAAACATTT TTTGCATTTC
  AACAAAAGTC TGTGATCATT GAATGGTCCT TTACAGTTTT TACTTGTTCT TGGACTCTGC
  Y
  GTCTGGCAGT AGAGTGTAAT GTTACAGTTA TGTATGGTTT TTCTTGGACA CAGAGGGGTG
  GAGAGGAGGT ATGGGATGTG GAGTTGTCAG AGGATAGACC ATGAAGGGAT AAAACCTGGA
  GTTTATAATA AATCAAAACA AATGTATGTT TTTAAAAAAC CTCCAAAAGT GTTATTTCTC
  TTGTGTTTTA GATTTGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ
ss47873664	NES11694638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ
rs29708831					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873664	NES11694638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50578099 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	439 bp downstream
Gm44054	predicted gene, 44054	879 bp downstream
Rr630049	regulatory region 630049	581 bp proximal
Rr630050	regulatory region 630050	676 bp proximal