rs29708827 SNP Detail

Summary

• ID
  rs29708827
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50577402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGAGCTCC ACAGTGGGCA TCCACCTGGT GCAAATCTTG
  TTGACTTCAA GAGCTGTGTT GGTTTACACA TGGTGTTGGA CTGCAAACTA AGTTTTGTGT
  S
  TTGGTCTTAT TTGACTCAGA TGAAAAATTA AGTTCTCAAG ATGTCCTGTG TAGTTTAAAT
  GTAGACAACC ACCACAGAGG AGAGGGGGTT GAAGATGACC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss47873660	NES11694705	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs29708827					SNP	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873660	NES11694705	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50577402 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	1136 bp downstream
Gm44054	predicted gene, 44054	182 bp downstream
Rr630048	regulatory region 630048	1472 bp distal
Rr630049	regulatory region 630049	1278 bp proximal
Rr630050	regulatory region 630050	1373 bp proximal