rs29708825 SNP Detail

Summary

• ID
  rs29708825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50577364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGCCAGA AGCACTTTCC
  CACAGACCCA TGGAAATGTG TGGAGTATAA TGTGCTGTAA GATCTGTGTA TGGTCTGGAA
  CAGGAAGCCT CTGCCTGCAG CACATGGACC TCTGGCCTTC CCATAGTTAC GAGGGAGAGA
  TGAGCTCCAC AGTGGGCATC CACCTGGTGC AAATCTTGTT GACTTCAAGA GCTGTGTTGG
  Y
  TTACACATGG TGTTGGACTG CAAACTAAGT TTTGTGTCTT GGTCTTATTT GACTCAGATG
  AAAAATTAAG TTCTCAAGAT GTCCTGTGTA GTTTAAATGT AGACAACCAC CACAGAGGAG
  AGGGGGTTGA AGATGACCAG TATCAAGATC CCAATGTGTG ATCAGATACT TAGAAACATC
  TGAGGGTGGC TTTGAACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873658	NES11694703	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29708825					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873658	NES11694703	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50577364 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	1174 bp downstream
Gm44054	predicted gene, 44054	144 bp downstream
Rr630048	regulatory region 630048	1434 bp distal
Rr630049	regulatory region 630049	1316 bp proximal
Rr630050	regulatory region 630050	1411 bp proximal