rs29708473 SNP Detail

Summary

• ID
  rs29708473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9618144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATTTATC AGAGCAATGG
  AAACATAGTA GGATGAATTC CAAATATGAC TCTTTCAGGT TGGAACATCT GCAGGCATGT
  GGAAAATACA ACTGCACTGT TTGTCAGGAG TGAACCAAAA GGAAAACCAT GTAAACTTGA
  GAGATAAGCA GGAGGGAGGA CAGGTTCTTA AGGACAGTGG GCGATGCTGC TGCTCATTAC
  R
  TCAGGAGACA GCAGGGGCTC GCCATATGCA CCTAGGCCTG TCCATCCTGA TGGATGTGCG
  GAGCTGCCTA GCACTCTCAG CCTAGAGAGA TTCTGAGGAT CATTATCACC ACTTGCCCTG
  TGAAACTATA CGCATGTACA GGGAACGTGT GTGTGTGTGT GTGTGTGTGT GTGCGCGCGC
  GCGCGTGTGT GCGTGTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49557689	NES12888958	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29708473					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557689	NES12888958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9618144 () rs orientation: forward

Symbol	Name	Function Class
Gm65791	predicted gene, 65791	632 bp upstream
Rr573443	regulatory region 573443	1783 bp distal
Rr573444	regulatory region 573444	467 bp distal
Zfp704	zinc finger protein 704	Intron