rs29708472 SNP Detail

Summary

• ID
  rs29708472
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9618170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG AGACAGCAGG GGCTCGCCAT
  M
  TGCACCTAGG CCTGTCCATC CTGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45518139	mCV23339092	ABI	CRAMUS_MOUSE	f	SNP	A	A	C				A		C
ss49557688	NES12888959	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	C		C	C	A	A		C	A	A		C
ss134576440	ENSMUSSNP1703996	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
ss320651457	CHEV_3_9553110	CHEVERUD	SCREENING_POP	f	SNP												A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29708472					SNP	A	A	C	A	A	C	A	C	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557688	NES12888959	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9618170 () rs orientation: forward

Symbol	Name	Function Class
Gm65791	predicted gene, 65791	606 bp upstream
Rr573443	regulatory region 573443	1809 bp distal
Rr573444	regulatory region 573444	493 bp distal
Zfp704	zinc finger protein 704	Intron