rs29707100 SNP Detail

Summary

• ID
  rs29707100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50380838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAACTGA TCCATTACAG
  CACCAGTAGG GAATGAATGT ATTGCCTGTA TCATGTTTCA AGGGGGTAGG TGAATAAAAG
  TGTGAAACAA GGCAGGCAGA TTGCAAAGGC CAGCTTGGCC TACATAATAA AACATTAGTT
  CAAAAAAGAA ATGAGCCTAT AACTCAACTG TGAGTCTGAG CCAGGAGCAC GTGCAGGCTA
  Y
  AAGGTTTAAT AACTCTGGCA ATTAGAAAGC CTAGGTAGGT CTGGTCCTCT TCCCTCCACA
  TACAGTGATG TGCCATTAGG CAAGCATGTC GGTCTCAGTG ACGGATCCCT ACTCAGAGAT
  GATGAACTCT AATGCCTCTG GACAACGCCA GCAGTCTAGG TCTACGCCGT GGTCGGTGGA
  TATCATCAAC CAGCTCCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47871922	NES11689856	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29707100					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47871922	NES11689856	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50380838 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr630005	regulatory region 630005	735 bp proximal
Tssr60914	transcription start site region 60914	1049 bp downstream