rs29706972 SNP Detail

Summary

• ID
  rs29706972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10344525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATTTTTT GTTTGGTTGT
  TTGTTTGGTT TGGTTTGATC TTATTTGGTT TTTGTTTTGG TTTTATTTGT TTGTTTGTTT
  TTCAGTTTGT TTTGTGTTTC CAGCTTGCTG ATATAATGCT ACAAATTTTA GTCTTATACA
  TTCATAATTG TGTAAATGAA CTCTTCTCCC TAATATAGAA AAGTCTAAAA TCTAAAATAC
  R
  CAGAAAGAAA TGCTAGGAAG ATGGCCAAAT ACACTGAAGG AAGACCTGAT GGGATGGCTA
  AAGAACTTAG TCTTTACCTA CCGGAAACTG TAGATGTTTT CAGATAAACC GAAAAGCTTA
  CCCTTGGACA CTCTCCACAA AAAGGAGGGG GAGGGGAGGA GGAGGAAGAA GAAGAGGGAG
  AGGAAGAGGA AGCAGCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49558919	NES12892769	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29706972					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49558919	NES12892769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10344525 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr573600	regulatory region 573600			1704 bp distal
Rr573601	regulatory region 573601			1896 bp proximal