rs29703589 SNP Detail

Summary

• ID
  rs29703589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50305326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACATAAAC AAAACCATAA
  TTTTTATAAA TCATACACCA TATATAAATA TATTATATTA TATTATATTA TATTCCTCTA
  TATTTAATGG GTTACATTAA ATATAGAGGA TAACTGTGGG GTTTGCCTAT TCCAGAAAGT
  AAGGTATTTT ATGCATCCAT TTAAAACAAT GTTTATAAGT TTAAAGTAGT ATAACAAACA
  Y
  ATCAGACAGT AACAGTATAC AATGTATAAC ATAAATTAGA ATGATTAAAA AACCTGCACA
  GAATATAAGC AGGTTTAAGC GGAGGTAGAA CACACAACTA GGAATGGGAA ATCGCAAAAA
  GTCTAAGTGA CAGAAACAGA GGGAAGGCAC ATTTTCCACA TTCTCTTCAA GCGTATCACT
  TTGTGTTTGG GGGTGTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47870720	NES11694566	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29703589					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870720	NES11694566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50305326 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629983	regulatory region 629983	1577 bp distal
Rr629984	regulatory region 629984	509 bp proximal