rs29703074 SNP Detail

Summary

• ID
  rs29703074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50335815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTATACT TAGACTGCAA
  TCACATGAGC TGGAGTTGCC TTTTGTTAAG CGTCTCTCAG CGAAGGTTTT ACAAGTGCCA
  ATAGGGCAAA GAGCAACAGA AAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGGAAACTA TTCAGAGGCA GACTGGTGTG TGAGGGCCAA ATGCAAGGGA AATCATTGGG
  Y
  GATCCTGTGA GCACCCATCT CAGTTCACAG GCTGGGGAGG GGAGAGCCTG TGGACACATA
  TCCCAATTCA GGGGTGGGGG AGGGGCTGAG CGTTAGTCAT TGGCTGGACC ACTTCCAGAA
  GACCAGGGAC CAGGCTGTCT TGAAGAACTC CAAAGGACAC AGACACCAAG GAGAAAACCA
  GGCTGATGTG TAGAGTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47871284	NES11692753	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29703074					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47871284	NES11692753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50335815 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr1641	regulatory region 1641	1532 bp distal
Rr629988	regulatory region 629988	within coordinates