rs29702853 SNP Detail

Summary

• ID
  rs29702853
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50305059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAGGAG GAGATGAAGG
  GGACCCAAGT TCAATACCCA GCACAGGAAG AAAGGAAGAA AGACAGGAGG AAAGAGGGCA
  GAGAGGAGGG AGGAAGGAAA TCCTTCTGTA TTCTTCTTGG TTCTCACAAG AAAAACAAAC
  AGAAAATTCC AACGCTATTG CTGTCGTCAT AAAAATTCTT ATTTCCATAG CATGCTAATA
  W
  TTTAGTAAAA GGGTGGACAG CTAACCTTTG AACTCATTGT CAAAACATAC TCTTCCTTGG
  GAATAAATAC ATAAACAAAA CCATAATTTT TATAAATCAT ACACCATATA TAAATATATT
  ATATTATATT ATATTATATT CCTCTATATT TAATGGGTTA CATTAAATAT AGAGGATAAC
  TGTGGGGTTT GCCTATTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47870714	NES11694563	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29702853					SNP	T	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870714	NES11694563	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50305059 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629983	regulatory region 629983	1310 bp distal
Rr629984	regulatory region 629984	776 bp proximal