rs29702845 SNP Detail

Summary

• ID
  rs29702845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50303980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGAATGT GGCAAACCAG
  AAACCAACAC TGAGACTGTG TGATGTTCGG GCACCTGTGC AGAGCGCTGT GTACCCAGAG
  GACTACGAGC ATCTTCCTAA CCCGACTGTA TGCTGCTTCC TGAAGTCATA GGCTGCTGAG
  GATTAGCCAG ACACTCCAGG GACCCCACAG CTTACATTCA CATTATAATT TATACCTTTC
  Y
  TTAAACACTA CATTCATTTA TTTATGTAGC ATTCAATGCC ACAATGTGAT GTGCATGTGT
  GTGTGTGTGC GCGCGTGTGA ATGTGCGCGC GCACACAAGG CATTATACTT ATCTTAGCAC
  TGGGAAGGCA CAGACAGGTG GATCCCTGGG GCTCTTGGGC CACCAAGTCT AGACTAAGTG
  ACAAGCCCAA GTGTCAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47870706	NES11694737	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29702845					SNP	C	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870706	NES11694737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50303980 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629982	regulatory region 629982	1217 bp distal
Rr629983	regulatory region 629983	231 bp distal
Rr629984	regulatory region 629984	1855 bp proximal