rs29702663 SNP Detail

Summary

• ID
  rs29702663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50281447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCTTTG TTGAAAACAG
  TGGTGTGTGT GTGTGTGTGT CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGACAGC
  ACACACATGG AGGTCAGAAG GTAACTTTCA GGGGTCACTT CTCTCCTACC ACGTGGGTTC
  TGGATGCCAA GTTCAGATCC TGAAGGCCTG CAACCAAAGC TTCTAACCTC AAGCCCGGCT
  Y
  GCTGCACTTT CCGTAGCATC TTCTCTGAGA TGGGATCTTG CCATACAGCA CTTACAATGT
  CCTCCTGCCT TACTCTCCTG AGTCCCCAGG GTTGGTGTGA CTGGGGTGCA CGTCCATACA
  CTCCATTCAC CCACTGTTTC CTTGCAACTG AGTTCCATTT TATGCTTTGT TCTTATCAGA
  TTACAAATAT TTCCTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47870414	NES11696183	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29702663					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870414	NES11696183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50281447 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr399651	regulatory region 399651	494 bp upstream
Rr629974	regulatory region 629974	388 bp proximal
Rr629975	regulatory region 629975	908 bp proximal