rs29702659 SNP Detail

Summary

• ID
  rs29702659
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50281227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGCAGG GGCTCCCATC
  TCTTCAGTTC CTCTCAGCAT TTTGGTGCCA GCTGTTCTAA GCAATGGTTT TACTTGGTAT
  TTCCTGAATG ACATGACGAG TGATACTGAA CGTCCACTCA GCTGTTGGCT GTTCGCTTTT
  AGGGATGATT TTAAAGGTAC TTTTGTTCCC CCTTTTCTGG GAGGCAGGCT CACTGCCACC
  K
  AGCTGTGCTT CTAGCTCTAT TTGCCTTTGT TGAAAACAGT GGTGTGTGTG TGTGTGTGTC
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGACAGCA CACACATGGA GGTCAGAAGG
  TAACTTTCAG GGGTCACTTC TCTCCTACCA CGTGGGTTCT GGATGCCAAG TTCAGATCCT
  GAAGGCCTGC AACCAAAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47870410	NES11696218	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29702659					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870410	NES11696218	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50281227 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr399651	regulatory region 399651	714 bp upstream
Rr629974	regulatory region 629974	608 bp proximal
Rr629975	regulatory region 629975	1128 bp proximal