rs29701913 SNP Detail

Summary

• ID
  rs29701913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50303925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGTCCCT GTCCTCGGTG
  TAGGTATGAA AATGGGTGGT GGATGGCGAC TTCAGTATTG AATGTGGCAA ACCAGAAACC
  AACACTGAGA CTGTGTGATG TTCGGGCACC TGTGCAGAGC GCTGTGTACC CAGAGGACTA
  CGAGCATCTT CCTAACCCGA CTGTATGCTG CTTCCTGAAG TCATAGGCTG CTGAGGATTA
  R
  CCAGACACTC CAGGGACCCC ACAGCTTACA TTCACATTAT AATTTATACC TTTCTTTAAA
  CACTACATTC ATTTATTTAT GTAGCATTCA ATGCCACAAT GTGATGTGCA TGTGTGTGTG
  TGTGCGCGCG TGTGAATGTG CGCGCGCACA CAAGGCATTA TACTTATCTT AGCACTGGGA
  AGGCACAGAC AGGTGGATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47870704	NES11694736	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29701913					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870704	NES11694736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50303925 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629982	regulatory region 629982	1162 bp distal
Rr629983	regulatory region 629983	176 bp distal
Rr629984	regulatory region 629984	1910 bp proximal