rs29700578 SNP Detail

Summary

• ID
  rs29700578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:60453632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGCCTTT AGTCCCAGCA
  CTTGGGAGAC AGATACAGGC AGATTTCTGA GTTTGAGGCC AGCTTGGTCT ACAAAGTGAG
  TTCCAGGACA GCCTGGGCTA TACAGAGAAA CCCTGTCTCG AAAAAGCAAA AAAAAAAAAA
  AAAAAAAAAG AAGAAGAAGA AAGAAAGAAA GAATGCATGC TTATTTTTAA AAATTGATAA
  R
  AAGTAGCTAG ATCTCCAAGG ACCTAAAAGT TACTGTTATC TTGAATACAC ATCTGGAACT
  TGCTACTCTG TTGACCAGGC TGGCCTGGAA TTCAGAGGTC TACCTGCTCT GCCTCCTGAT
  TGCTGAAAGA ATCATCCCAC AAGATAGATT TATTTGGAAC AAAAATTGAG TTTACCTTAA
  GCGGGGCATT GGTGGCAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47372671	NES11057416	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29700578					SNP	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47372671	NES11057416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:60453632 () rs orientation: forward

Symbol	Name	Function Class
Abi2	abl interactor 2	Intron