rs29700312 SNP Detail

Summary

• ID
  rs29700312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50334397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGAACT CCTGTCTAAC
  CTCCTTCCCT GGTGAAATTC TATTTCTACG AAAACCTTCT CTTCCCTGAA GAAAGCCCCT
  CCCTCTTTTG AAGAGAAGTA CTAAGAATGA AAACCTAGCT TCTTCTGCAT GCCTTTCCAG
  CTAGAATGTG GGTTCCTTGC CTTACCAGTC TTGTTTATTA TCATCTGTGT CCTCAGTAAA
  Y
  ATCAGCTGAG CAAGTCTGAC AGCAAGAGTC TATGGAAAGG GCACTGAGTG CCCACTCATT
  GTGGTATTCA GAAAAATCAG ACGCAGGCTG GGAGACGGTT CAGTGGATGA AGGTAGTGAC
  TATTATGCCT AAAAACTTGA GTTCAAGCCC TGGAAGAAGA GCCATGAGAG AAGAGAACAG
  ACCCCAGGAA GTTGTCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47871262	NES11692917	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29700312					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47871262	NES11692917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50334397 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr1641	regulatory region 1641	114 bp distal
Rr629987	regulatory region 629987	1768 bp distal
Rr629988	regulatory region 629988	361 bp proximal