rs29700306 SNP Detail

Summary

• ID
  rs29700306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50334247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGCCCA CCTCTAGACT
  CTGGAAGAAG GAGCTCAGAA GCCCTGGGCC TGCTCAGAGC TCCTAGCTCT CTGGTCACTG
  GCGTACAAGT GTGTAAGAAA TCAGCCCGTG CATTTCACTG CTGCTAACCC TTTGCCCATT
  TCCCCCTTCC TGCCTGAACT CCTGTCTAAC CTCCTTCCCT GGTGAAATTC TATTTCTACG
  M
  AAACCTTCTC TTCCCTGAAG AAAGCCCCTC CCTCTTTTGA AGAGAAGTAC TAAGAATGAA
  AACCTAGCTT CTTCTGCATG CCTTTCCAGC TAGAATGTGG GTTCCTTGCC TTACCAGTCT
  TGTTTATTAT CATCTGTGTC CTCAGTAAAT ATCAGCTGAG CAAGTCTGAC AGCAAGAGTC
  TATGGAAAGG GCACTGAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47871256	NES11692914	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29700306					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47871256	NES11692914	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50334247 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr1641	regulatory region 1641	within coordinates
Rr629987	regulatory region 629987	1618 bp distal
Rr629988	regulatory region 629988	511 bp proximal