rs29699056 SNP Detail

Summary

• ID
  rs29699056
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50307162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTGTGGA TATCTGTTCC
  TGCTGTTTGT TGATGGCTTC CGTTACTTGG TATTACAAGG TCTTCGTTCG CAGAATAAAG
  ACAGTAACGC TGATTTGGCA TTAGCTAAGC CTGTCATCCT CACTGAAGGC TTTATCTACT
  CATTTGTTCA TTCATTCATT CATTCATTTA TTTTACACGC CTCATTTCAT AAATATTTCA
  S
  TATAAAAAGT CAAATTCAGT TGACACTTTT GAAAATGTAT TACTCTCTAG TTTAGGAAAC
  CCTTATCCTA GCAGTTTGAC AAATATTTGA ATCAAATTTT GTCTCAACTT TCATATTTAA
  CTTGAATTTT AGCACACAAC AGAATAAAAC TTAAGCTTCT TTTCAAATCG CTTTCAGCTG
  CGCTGACCTA ATTTGTTAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47870766	NES11694602	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29699056					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870766	NES11694602	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50307162 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629984	regulatory region 629984	858 bp distal