rs29699054 SNP Detail

Summary

• ID
  rs29699054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50307047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCCCGA TGACATCCCT
  GAATATATCC TAGTAGTTAA ACACCTCACG ACTGACTTGA AAAAGAAAAG TTTTTTTAAA
  ATTCCACAGA AACAAACCCC ATAGCTGTGT GCTGGTGAGT GTGGATATCT GTTCCTGCTG
  TTTGTTGATG GCTTCCGTTA CTTGGTATTA CAAGGTCTTC GTTCGCAGAA TAAAGACAGT
  R
  ACGCTGATTT GGCATTAGCT AAGCCTGTCA TCCTCACTGA AGGCTTTATC TACTCATTTG
  TTCATTCATT CATTCATTCA TTTATTTTAC ACGCCTCATT TCATAAATAT TTCACTATAA
  AAAGTCAAAT TCAGTTGACA CTTTTGAAAA TGTATTACTC TCTAGTTTAG GAAACCCTTA
  TCCTAGCAGT TTGACAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45887124	mCV27582400	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss47870764	NES11694599	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A	A	A	A	G	G
ss133178717	ENSMUSSNP1701750	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29699054					SNP	G	G	A	A	A	G	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870764	NES11694599	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50307047 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629984	regulatory region 629984	743 bp distal