rs29698226 SNP Detail

Summary

• ID
  rs29698226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50381207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTCGGTG GATATCATCA
  ACCAGCTCCG GCGTGTCTTC TCGCAGGCCG GAATGCAACT GTGAGACTGG GCACACCTTC
  CCACATCCAG TCTCTGAGCT TAATGAGACT TCATCATTGC CTCCATGATG GGACCTGAAG
  GCAGGCCACC TTCTCATCAC TAAATCCTAC ACTATCTTTC CTGGCAAGGC CACACTGTGG
  R
  CCGTGGACCT GAGATAGGCT TGCACACTTG AGTGAGCAAT CACCAACACA TGAGAGGAGC
  ATGAATATGT GAAGAAAAAA TGCAAGGAGA AAGGGGGTGC TGAGGTCTCA ATGCCTAGCT
  CCCCTAGTTT TCATAAAGTA AAATCTCATC ACCAATCTGA TGGCAGTGGG AGCTGGGTAA
  GGGATCAGTT AGGTTAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47871926	NES11689858	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29698226					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47871926	NES11689858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50381207 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr630005	regulatory region 630005	366 bp proximal
Tssr60914	transcription start site region 60914	680 bp downstream