rs29698053 SNP Detail

Summary

• ID
  rs29698053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50277454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTTGTC TGTGAACTGT
  TCATTCTCCC AAGTCCACTT TCTCCCCTAT TGAGTGATGT CTTCCTGACT CTAGACCAAA
  CCCGCACTGT AAGGTTGTAA GTACAGACTC ATGTTGATCA TTGTCTTGGA GCTTGGGTAT
  GCCATTAAGG CTTTCTTACA CAAATCTAGA TTGTACACAG CCATCTTTCC TTTCATGTGG
  Y
  CTTTAGATTT CGAGTCTCAA TTTCAGAAGG TTGGGGGGGT ATTATTCTGT TTTACGGAGT
  AGGAATCGGA GGTTGGGGAA GATGGAAAGC CTTGTCATAG ACCACACAGC TCATGAATCA
  GAAGTGAGAT CCAAATGCAC TAAAAAGAAA TTTAAATCGA TGGGTCAGGA AAGCAGGGTG
  CTTCCATTAT TCCAAATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47870364	NES11696425	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29698053					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870364	NES11696425	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50277454 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629972	regulatory region 629972	307 bp proximal
Rr629973	regulatory region 629973	659 bp proximal