rs29698047 SNP Detail

Summary

• ID
  rs29698047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50276492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTGAAA AACCGGGGCT
  GGTGCTCCAC ACCGTTCTCC TCCAAGACCC TCCGCCGCTC TCTCTGCAGC TTCTCGATCC
  TCTGCTTCTG AACCTCAGCC TCCTCTATGT TCCCTTCCTC TAGAAGCCTG GGGATTGAGG
  GCAAAGAGGA AAGGACTGTG CATTGAAAAT ATAACAACCA GCCAGTTCTG GGTACACGAC
  R
  GAGTATTCAA ATTTCCAGCA CCCAGTCTCT TCCTCCCACC TCGATGCAGC ATTCTGAGTC
  AGGAAGAGGC TGACCCCGCT GTGAGCAGGC GATAGTTACA GGGTTCAAGA TTTCTATCCA
  GAGGGAAACC CGAAAAACCC ATGTCTGTCT TCTTCCCTCG CTCTCCCATC ACAGGAGCCC
  CACATCACAG GAAATGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47870358	NES11696520	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29698047					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870358	NES11696520	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50276492 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629972	regulatory region 629972	1269 bp proximal
Rr629973	regulatory region 629973	1621 bp proximal