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rs29697221 SNP Detail
Summary
  • ID
    rs29697221
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:50276098 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCTCCCTCG TGCTGGCATT
    ATGAGTATGA CTGTAAGTCA CTCATGCCTA GCTCCAGAAA GTTATGTGAA GAGTGAAGAC
    CAATCAGGCC TTCCAAACTC AAGCACAAGT GTATTGGAAC TGCTGATTCG AGGCCCAGGT
    ACTTCACATC CTACAGCAGG GCTGTCATCA ACTAGCCTGT CCTGAGAAAT CTATCCATGC
    Y
    AGCCAGCAGC CTCAGCTGCA AATGGGACAA GATGGCCCAG CACTGGGACC AGCTCTGAAC
    GTGTCCCTTC TTCCGCTACA AGGAGGCAGT GCTGAGCCAC TGGGGAGGAG CAGGAGAGCC
    AAAGGGGAAG TCCCCAATCC TGTTTTGGGA CAGTCATGAA GAAGTACACC CCACCCCCAC
    CTCCTCCAGG CACAAACCTG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss47870352 NES11696516 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T C T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs29697221 SNP T T T T T T C T T T C T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47870352 NES11696516 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:50276098 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Osbpl3 oxysterol binding protein-like 3 Intron
Rr629972 regulatory region 629972 1663 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory