rs29697221 SNP Detail

Summary

• ID
  rs29697221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50276098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCTCG TGCTGGCATT
  ATGAGTATGA CTGTAAGTCA CTCATGCCTA GCTCCAGAAA GTTATGTGAA GAGTGAAGAC
  CAATCAGGCC TTCCAAACTC AAGCACAAGT GTATTGGAAC TGCTGATTCG AGGCCCAGGT
  ACTTCACATC CTACAGCAGG GCTGTCATCA ACTAGCCTGT CCTGAGAAAT CTATCCATGC
  Y
  AGCCAGCAGC CTCAGCTGCA AATGGGACAA GATGGCCCAG CACTGGGACC AGCTCTGAAC
  GTGTCCCTTC TTCCGCTACA AGGAGGCAGT GCTGAGCCAC TGGGGAGGAG CAGGAGAGCC
  AAAGGGGAAG TCCCCAATCC TGTTTTGGGA CAGTCATGAA GAAGTACACC CCACCCCCAC
  CTCCTCCAGG CACAAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47870352	NES11696516	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29697221					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870352	NES11696516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50276098 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629972	regulatory region 629972	1663 bp proximal