rs29697217 SNP Detail

Summary

• ID
  rs29697217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50276011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAATGAT TGATTGATTG
  ATTGATTGAC TGGGTTTCAC AGGGTAGCCC AGGCTAGACT CAAACTCTTA CCAATCTTCT
  TGCCTCAGCC TCCCTCGTGC TGGCATTATG AGTATGACTG TAAGTCACTC ATGCCTAGCT
  CCAGAAAGTT ATGTGAAGAG TGAAGACCAA TCAGGCCTTC CAAACTCAAG CACAAGTGTA
  Y
  TGGAACTGCT GATTCGAGGC CCAGGTACTT CACATCCTAC AGCAGGGCTG TCATCAACTA
  GCCTGTCCTG AGAAATCTAT CCATGCTAGC CAGCAGCCTC AGCTGCAAAT GGGACAAGAT
  GGCCCAGCAC TGGGACCAGC TCTGAACGTG TCCCTTCTTC CGCTACAAGG AGGCAGTGCT
  GAGCCACTGG GGAGGAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47870348	NES11696512	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29697217					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870348	NES11696512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50276011 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629972	regulatory region 629972	1750 bp proximal