rs29697124 SNP Detail

Summary

• ID
  rs29697124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50306184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCAGGCA CATGCCACAA
  GTCTCAAGCA CAAACCAGTT GTGTTCTGCT GAGGAGGAGG GCCCCGAGTC TGAGGCACGC
  CCTTTTAGTC TCTAAGGCTC AGCGGGCTTC TTTCCACACT AAACTGCTCA GTGCTGGCTG
  ACATCAGGCG GGGTGTCTCA CTGCATACTC AGAGGCCAAC AGGCTGCTGC CAAGGGGCCG
  Y
  CAACAAACAA CTCTCTTTTG GGCCAGAGGT GCCTATGGTG GTAGACCATC CCTTATTCAT
  GGAGGAGTGG GAATAATTTT CTTGTCTCTC TTTACTTACA ATGACTCTTA AAGAAAAGGA
  AGCCTCGGGC CCTGGTATGA CTAACAATTT AGCGGAGCAA CACTCTCCTC TTTTCTCACA
  TTCCCCCATT CTTCACCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47870744	NES11694578	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29697124					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870744	NES11694578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50306184 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629984	regulatory region 629984	within coordinates