rs29696356 SNP Detail

Summary

• ID
  rs29696356
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50283130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAACCTG GACTCAAACA
  CATTAACGCA TTCTTTCTCT GGTCCCGGAG TAGACGGTAG CTAAGGAAGT GAGCACACTC
  CCTTGAGCCG ATGTGGACAG CTATTCTTCC TGGACTAGAG GGACACATTC ATGCCCCAGG
  TTGCCTTTGG CTTCTTTCTG AAAAACACGT AGGCAAAGTT TTCCAAGTAT TTTTGTACTT
  K
  GAAATTTTCT ACGAAGTACT GTCATTGCTG GTTTTATGCC TGTCTGCAAC CTCATTTGAC
  TTATAAATTA TCATAAAAAA CCCAGCCAAC CTCACAAATG CACCCTGTGG GTTACAGGTG
  GTGCAGAGGA TCCGGTGAAG TCAGACTCAG GATTTTGATC GCAGTCAGGT ACAAGCATCT
  TTGACAAGGG TTTTTGCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45894235	mCV27582172	ABI	CRAMUS_MOUSE	f	SNP		G	T					T		T
ss47870436	NES11696113	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T		T	T	T	T	T	T	T	T
ss133178514	ENSMUSSNP279033	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29696356					SNP	G	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870436	NES11696113	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50283130 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr399651	regulatory region 399651	888 bp downstream
Rr629974	regulatory region 629974	499 bp distal
Rr629975	regulatory region 629975	754 bp distal