rs29696229 SNP Detail

Summary

• ID
  rs29696229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28750079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTGTG CGCCCTGAAG
  GTACAGTTGC AGTTGCGCAT GAGGTCGATC TGTGGCCTGA GTTCACCTGC CCAAATCAAC
  CTGTGCAATG CGCTCTCTCC ACACTCACCC TGCAGGTAGG TTTAGCCCAC CCCCAGAGGC
  TGCACTGTCT AAATGAATTG TGCCTGCAAT GGGGGAGGAG CAACGTCCCT GACCTCTGGA
  Y
  GCCCGCTGGA GAGAAACACG GCAGTCTTGG ACTCCCAGGT ACAGCCCCGC GATGAAGACA
  AACGCAGTGA CTTCAAGGCA GACTTCAAAA GACAAAGGTA GAAAAACAAC CCAGGGCAGC
  TGTCACTCCT GATCGGCACA AGTGTGTTTT GGGCAGAGCC AAGTCAGTGG AAAACAGTTG
  TCAGGGCATC TCCCCTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46872717	NES10796718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29696229					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872717	NES10796718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28750079 () rs orientation: forward

Symbol	Name	Function Class
Rr574615	regulatory region 574615	633 bp distal
Rr574616	regulatory region 574616	within coordinates
Rr574617	regulatory region 574617	1838 bp proximal
Rr574618	regulatory region 574618	1984 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	1973 bp upstream
Tssr28652	transcription start site region 28652	189 bp downstream
Tssr28653	transcription start site region 28653	1971 bp upstream