rs29696157 SNP Detail

Summary

• ID
  rs29696157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108970983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATTCTG AGGCAATTTC
  TCAACTTATT GTTCTCATTT TCCATCAAAA GCTGTTTATG CATTCATAAA AGTCAATGAA
  ACATATTTAT GACATACTAA TTCCATTAAA AACACTATAG TTATTTGAGC AATTTCACAT
  TTGTAATTAA CAGTCACATT GACTGTAATC TAACTTTTGT GCTTTTCTGT CATTCTGGAG
  R
  GGTGTGTATT AATAATGGAG ATTTTTCTTG GTTATATTTG GGTTCATCCA TGGGAGACAG
  AAAATACCAG GGGTTTAAAG TCTGAGCCTA TCTGTCACAC GGCCATTTGT TCAGGTCTAG
  GGCTGAAGTG ACCCTTCCGT TGTCACCATG GTCCTGTGTC CTCCTGATGT ACTGTCCCTT
  TTGTTTCTAT TTGTCCATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46871917	NES10697173	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29696157					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871917	NES10697173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108970983 () rs orientation: forward

Symbol	Name	Function Class
Gm36778	predicted gene, 36778	within coordinates
Rr397947	regulatory region 397947	349 bp downstream
Rr583384	regulatory region 583384	351 bp distal
Rr583385	regulatory region 583385	448 bp distal