rs29696154 SNP Detail

Summary

• ID
  rs29696154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108970746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCTAGTC TACTCGGCCC
  TAAATTGTTT CCACAGTGCA ATAAAATTAA AAAACAAGAT TGTTCATTTG CTAAATCTAT
  AGAATCTGTT CACAAACAAA ATAAATAATA CTTCAACGAA GCATACACAA AATAGCATCT
  CTGTTGTCTC CATAATGTTA GGGGCCCTTG TTTATTCTTC TTATACCTAT CAACAGCATT
  Y
  TGCTTATATA GTGCTTTTTT TTAAAAGCCA GATTAATTAA ATTCTGAGGC AATTTCTCAA
  CTTATTGTTC TCATTTTCCA TCAAAAGCTG TTTATGCATT CATAAAAGTC AATGAAACAT
  ATTTATGACA TACTAATTCC ATTAAAAACA CTATAGTTAT TTGAGCAATT TCACATTTGT
  AATTAACAGT CACATTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46871914	NES10697172	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29696154					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871914	NES10697172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108970746 () rs orientation: forward

Symbol	Name	Function Class
Gm36778	predicted gene, 36778	within coordinates
Rr397947	regulatory region 397947	112 bp downstream
Rr583384	regulatory region 583384	114 bp distal
Rr583385	regulatory region 583385	211 bp distal