rs29695418 SNP Detail

Summary

• ID
  rs29695418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50282486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTCCTG GCTCATCCCA
  TCTCCCAGGC CCATAGCTCA GTTCAGCCTT GTTTATGCAG TACCACTCGG CAGCCAGCAG
  AGGGAGCACT AACTCCCTAA AGGTGATGCT TCAGAAATCT CCAACTGCCT GGCCACCCTT
  AAAATTCCTC ATGGACAGAA GGCATTCATT CCTCCATAAA TCAAAAGCCC CAGCACTATT
  Y
  CCAGTGGAAA CAACAGCCAT ATTTGGAAAG CGGGAAATCT GAGTAACATT TCCAGGTCGT
  TTTCTGCCAG TTCCAGGCTT TGGTAAAATG CAAAGAGAGG TGGGACACAT CAGCCTGGAG
  ATGTGAACGG GGAAATTACA AAGTGAGTGC TGCAGCCATG TAAAAGTGAC AGGGAAGAAA
  GGAGCCAGAC CTTTATTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47870428	NES11696160	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29695418					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870428	NES11696160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50282486 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr399651	regulatory region 399651	244 bp downstream
Rr629974	regulatory region 629974	within coordinates
Rr629975	regulatory region 629975	110 bp distal