rs29695416 SNP Detail

Summary

• ID
  rs29695416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50282256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTAATGC CTGGGAGCTT
  TCACTTCTGC AATTTAAAAT TAACTCATAA TTCTTTTTAC TTGAAGAAAA CAGTCATTTG
  CAGACCAGTT AAAGAGGTTG CATAAAATCG CAGTTTGTAC TACTTCCTCC ATTCTAGGCC
  CAGTCCAGCA GCAGGGCCCT TGTACAAGCT ACTTCCTCAG TATCTATCAA TGGTGGTCTG
  Y
  GAGGCAGCCT GGCTTGTGGC TTATTTTGCC TCAGTCCTGG CTCATCCCAT CTCCCAGGCC
  CATAGCTCAG TTCAGCCTTG TTTATGCAGT ACCACTCGGC AGCCAGCAGA GGGAGCACTA
  ACTCCCTAAA GGTGATGCTT CAGAAATCTC CAACTGCCTG GCCACCCTTA AAATTCCTCA
  TGGACAGAAG GCATTCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47870426	NES11696159	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29695416					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47870426	NES11696159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50282256 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr399651	regulatory region 399651	14 bp downstream
Rr629974	regulatory region 629974	within coordinates
Rr629975	regulatory region 629975	99 bp proximal