rs29695195 SNP Detail

Summary

• ID
  rs29695195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:105346145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGTCATTGT CCTCAGTTAT GCAGCCATAG CACCCATGCA
  GGCCCACCTA CCTAGTCCTA GCTAAACCCT AGGGCTACAA AGAAGAACGA AGGCCATGGA
  R
  GTGGGAGGGG GACTGAGGAG GAAAGCCAGG GCTGGGGAGC AAGAGTGCAG AGGAACAGTG
  TAGCCTGAAT ACATTATACC CAAGTATAGA ATTATCAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46332058	mCV24347276	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss136917775	ENSMUSSNP2489094	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss323176245	CHEV_9_105371276	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29695195					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105346145 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2c1	ATPase, Ca++-sequestering			Intron
				Noncoding-Transcript-Variant
Gm19667	predicted gene, 19667			1574 bp upstream
Rr686149	regulatory region 686149			950 bp distal
Tssr86838	transcription start site region 86838			1542 bp upstream
Tssr86839	transcription start site region 86839			1568 bp upstream
Tssr86840	transcription start site region 86840			1589 bp upstream