rs29694968 SNP Detail

Summary

• ID
  rs29694968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28752657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATCTGG AATGTTCAAA
  AAATGTCCAG GAATGAAAGG TAGTTCTAGA TTCAGAGACT GAGAACTGAT TGTTGCAGGC
  GACCTTGGAC CATGGGAAGA AGAAGAAATG ATCGGATGAA GCACCATCTG GGGGACTATG
  ACCTTGGGCT GACTCTTAGC TAATACTAGC ATAGCCTGTG TTGTATTCAT GGCTGTGACA
  R
  CATTGCAATC AGACAGGGAT TTTTGCCTTT GTTCTTAAGG AGAGTACCAG TTGAAGTCGT
  TAGGAATGAG GTGACACAAT TAACCTGCAG CTTAATTTTA AATGGTTCAG CCAAACCAAT
  ACGCGTTAAG AAACCAATGT GGTGAGTGTT AGGTAATTAC TGGGGAGCAA AGTGAAGGCT
  GTGGGGTTTT CATTTTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46872756	NES10834889	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29694968					SNP	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872756	NES10834889	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28752657 () rs orientation: forward

Symbol	Name	Function Class
Rr574616	regulatory region 574616	1816 bp distal
Rr574617	regulatory region 574617	595 bp distal
Rr574618	regulatory region 574618	317 bp distal
Rr574619	regulatory region 574619	within coordinates
Rr574620	regulatory region 574620	985 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	Intron
Tssr28653	transcription start site region 28653	596 bp downstream
Tssr28654	transcription start site region 28654	528 bp downstream