rs29694199 SNP Detail

Summary

• ID
  rs29694199
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28610409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACAGTCT TAAAACTGTG
  TTATCATCCC TAGTGGTAGA CAGGACTATA AATAAACTCT GCCCACAGAA TCCTCTGGCA
  TTGAGAAAGC ATATATTCTC AATCTTGGTA TAGAAGAGAA GTGGGGAAAA AATCCTGTAT
  TCTCACTGTG AGAAAGTAAG CTAATAAGAT ATGTTGATTG AAATAAGAAT AGAGAGTATG
  W
  CCATGATAAA ATTACATCAT GTCTGTAAGC TGACTTCATT CTTCTATCAT TCTGGGGCCA
  GAGGATTTAA AAACAAAGCA CATTTTGCAC CCTGAAAAGC TAGCAGGGAC ATTTGGAAAC
  AGAATGGTGT TCTGGCAGAG GACCAAAAAG TCTAAAAATT TGCATAGTTA GCAGTGCCTG
  TATGAGCCTC CAGTGGGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46870818	NES10803913	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29694199					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870818	NES10803913	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28610409 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574597	regulatory region 574597			1918 bp distal
Rr574598	regulatory region 574598			within coordinates
Rr574599	regulatory region 574599			1735 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant